Complex Trait Associations

The STRs below were fine-mapped as potentially causal variants for blood and serum biomarker traits in Margoliash et al. 2023.
phenotype Hg38 Hg19 association_p_value direction_of_association
alanine_aminotransferase 7:28207893-28207907 7:28247512-28247526 1.650000e-14 -
apolipoprotein_a 1:93392569-93392579 1:93858126-93858136 2.510000e-20 -
apolipoprotein_a 11:47310908-47310923 11:47332459-47332474 1.670000e-42 +
apolipoprotein_b 2:21043880-21043925 2:21266752-21266797 1.370000e-279 -
aspartate_aminotransferase 3:58403009-58403022 3:58388736-58388749 3.160000e-60 -
aspartate_aminotransferase 12:120909182-120909198 12:121346985-121347001 1.490000e-21 -
c_reactive_protein 16:51103628-51103642 16:51137539-51137553 8.410000e-18 +
calcium 11:2961502-2961517 11:2982732-2982747 1.270000e-31 -
calcium 15:96123673-96123694 15:96666902-96666923 8.340000e-13 -
creatinine 2:15646393-15646414 2:15786517-15786538 4.510000e-36 +
creatinine 3:141987266-141987298 3:141706108-141706140 9.470000e-48 +
creatinine 10:124794519-124794534 10:126483088-126483103 4.440000e-19 +
creatinine 20:63719066-63719080 20:62350418-62350432 5.590000e-19 -
cystatin_c 6:89412258-89412271 6:90121977-90121990 1.240000e-16 +
eosinophil_count 2:28462948-28462962 2:28685815-28685829 2.790000e-28 +
eosinophil_count 2:111120967-111121021 2:111878544-111878598 4.960000e-58 +
eosinophil_count 3:51081896-51081913 3:51119327-51119344 1.700000e-27 -
eosinophil_count 5:111081805-111081818 5:110417503-110417516 1.460000e-35 +
eosinophil_count 12:123361730-123361745 12:123846277-123846292 1.950000e-19 -
eosinophil_count 15:67241041-67241071 15:67533379-67533409 2.160000e-18 +
eosinophil_percent 2:28462948-28462962 2:28685815-28685829 2.900000e-25 +
eosinophil_percent 2:111120967-111121021 2:111878544-111878598 5.880000e-75 +
eosinophil_percent 3:51081896-51081913 3:51119327-51119344 1.080000e-29 -
eosinophil_percent 10:5998471-5998513 10:6040434-6040476 9.040000e-11 +
eosinophil_percent 10:92837098-92837136 10:94596855-94596893 3.330000e-19 -
eosinophil_percent 13:50322020-50322030 13:50896156-50896166 5.460000e-19 -
gamma_glutamyltransferase 1:26920756-26920789 1:27247247-27247280 1.520000e-16 -
glycated_haemoglobin 3:171780542-171780552 3:171498332-171498342 7.910000e-18 +
glycated_haemoglobin 19:17142167-17142190 19:17252977-17253000 1.320000e-89 +
glycated_haemoglobin 22:29967918-29967946 22:30363907-30363935 6.290000e-33 +
haematocrit 12:48093720-48093735 12:48487503-48487518 8.850000e-35 -
haematocrit 14:64247333-64247356 14:64714051-64714074 1.000000e-26 -
haematocrit 15:75954432-75954447 15:76246773-76246788 3.720000e-51 +
haematocrit 17:61373093-61373106 17:59450454-59450467 6.560000e-25 +
haemoglobin_concentration 14:64247333-64247356 14:64714051-64714074 1.150000e-24 -
haemoglobin_concentration 15:75954432-75954447 15:76246773-76246788 3.950000e-47 +
haemoglobin_concentration 17:61373093-61373106 17:59450454-59450467 7.240000e-30 +
igf_1 1:213990134-213990170 1:214163477-214163513 2.870000e-15 +
igf_1 2:203447168-203447199 2:204311891-204311922 3.970000e-11 -
igf_1 3:141378186-141378200 3:141097028-141097042 2.380000e-44 -
igf_1 16:81548131-81548151 16:81581736-81581756 2.580000e-30 -
lymphocyte_count 2:128318870-128318920 2:129076444-129076494 2.010000e-18 -
lymphocyte_count 12:12725746-12725760 12:12878680-12878694 1.180000e-33 -
lymphocyte_count 22:29967918-29967946 22:30363907-30363935 3.450000e-11 +
lymphocyte_percent 1:227289889-227289904 1:227477590-227477605 7.310000e-11 -
lymphocyte_percent 2:23985603-23985617 2:24208473-24208487 1.130000e-29 +
lymphocyte_percent 2:128318870-128318920 2:129076444-129076494 4.730000e-14 -
lymphocyte_percent 3:128484637-128484661 3:128203480-128203504 3.000000e-38 -
lymphocyte_percent 8:129678481-129678507 8:130690727-130690753 1.620000e-11 -
mean_corpuscular_haemoglobin 1:153927592-153927642 1:153900068-153900118 5.030000e-13 +
mean_corpuscular_haemoglobin 7:99060379-99060404 7:98658002-98658027 2.950000e-12 -
mean_corpuscular_haemoglobin 15:65725677-65725706 15:66018015-66018044 3.580000e-147 -
mean_corpuscular_haemoglobin 16:67195891-67195947 16:67229794-67229850 2.830000e-23 +
mean_corpuscular_haemoglobin 19:4426168-4426185 19:4426165-4426182 8.780000e-112 -
mean_corpuscular_haemoglobin 22:32501483-32501497 22:32897470-32897484 6.560000e-120 +
mean_corpuscular_volume 7:99060379-99060404 7:98658002-98658027 2.390000e-14 -
mean_corpuscular_volume 15:65725677-65725706 15:66018015-66018044 9.580000e-113 -
mean_corpuscular_volume 16:67195891-67195947 16:67229794-67229850 9.270000e-26 +
mean_corpuscular_volume 22:32501483-32501497 22:32897470-32897484 8.450000e-133 +
mean_platelet_volume 1:150579759-150579814 1:150552235-150552290 2.650000e-16 -
mean_platelet_volume 2:105893985-105894035 2:106510441-106510491 6.930000e-29 -
mean_platelet_volume 3:15661266-15661305 3:15702773-15702812 6.930000e-37 +
mean_platelet_volume 15:50104867-50104888 15:50397064-50397085 4.260000e-12 -
mean_platelet_volume 17:2593591-2593618 17:2496885-2496912 2.440000e-17 +
mean_platelet_volume 17:29514998-29515022 17:27842016-27842040 0.000000e+00 +
mean_platelet_volume 17:35544529-35544545 17:33871548-33871564 4.300000e-62 -
mean_platelet_volume 18:69868804-69868841 18:67536040-67536077 6.730000e-34 -
mean_platelet_volume 19:16090287-16090303 19:16201097-16201113 7.610000e-56 +
mean_sphered_cell_volume 4:56858492-56858511 4:57724658-57724677 1.480000e-21 -
mean_sphered_cell_volume 11:119206290-119206323 11:119077000-119077033 6.880000e-16 -
mean_sphered_cell_volume 16:67195891-67195947 16:67229794-67229850 3.070000e-23 +
mean_sphered_cell_volume 17:46006926-46006998 17:44084292-44084364 5.430000e-82 +
mean_sphered_cell_volume 19:17142167-17142190 19:17252977-17253000 2.050000e-65 +
neutrophil_count 8:129599504-129599515 8:130611750-130611761 3.010000e-63 -
neutrophil_count 15:51223259-51223285 15:51515456-51515482 1.870000e-13 +
neutrophil_percent 8:129592780-129592799 8:130605026-130605045 2.990000e-26 +
platelet_count 2:111116813-111116828 2:111874390-111874405 2.540000e-13 -
platelet_count 11:8824204-8824216 11:8845751-8845763 2.020000e-32 +
platelet_count 11:119206290-119206323 11:119077000-119077033 3.770000e-83 +
platelet_count 12:47810805-47810866 12:48204588-48204649 5.950000e-18 -
platelet_count 17:7823348-7823375 17:7726666-7726693 7.300000e-13 -
platelet_crit 1:3170058-3170078 1:3086622-3086642 4.240000e-12 -
platelet_crit 1:204557905-204557931 1:204527033-204527059 5.760000e-17 -
platelet_crit 1:225726659-225726675 1:225914361-225914377 3.520000e-14 +
platelet_crit 2:23870286-23870304 2:24093156-24093174 1.600000e-29 -
platelet_crit 2:111116813-111116828 2:111874390-111874405 3.950000e-16 -
platelet_crit 4:7039091-7039118 4:7040818-7040845 1.170000e-28 -
platelet_crit 11:119206290-119206323 11:119077000-119077033 6.070000e-103 +
platelet_crit 15:41962543-41962555 15:42254741-42254753 2.410000e-17 -
platelet_crit 16:88485441-88485456 16:88551849-88551864 3.690000e-30 -
platelet_crit 17:2593591-2593618 17:2496885-2496912 1.830000e-12 +
platelet_crit 17:10277612-10277637 17:10180929-10180954 5.190000e-13 +
platelet_crit 20:1949439-1949451 20:1930085-1930097 1.170000e-144 +
platelet_distribution_width 1:114637083-114637101 1:115179704-115179722 8.280000e-35 +
platelet_distribution_width 1:230901420-230901430 1:231037166-231037176 2.840000e-11 -
platelet_distribution_width 6:41820182-41820195 6:41787920-41787933 1.310000e-19 -
platelet_distribution_width 20:19921850-19921885 20:19902494-19902529 2.670000e-15 +
red_blood_cell_count 2:8620964-8621020 2:8761094-8761150 6.090000e-19 -
red_blood_cell_count 14:64247333-64247356 14:64714051-64714074 3.210000e-24 -
red_blood_cell_count 15:40020722-40020737 15:40312923-40312938 2.270000e-20 +
red_blood_cell_count 15:75954432-75954447 15:76246773-76246788 2.590000e-43 +
red_blood_cell_count 16:67195891-67195947 16:67229794-67229850 1.080000e-13 -
red_blood_cell_count 17:61373093-61373106 17:59450454-59450467 5.920000e-27 +
red_blood_cell_distribution_width 3:171780542-171780552 3:171498332-171498342 4.300000e-72 +
red_blood_cell_distribution_width 17:32142452-32142501 17:30469471-30469520 6.570000e-13 +
red_blood_cell_distribution_width 19:16130154-16130165 19:16240964-16240975 2.660000e-16 +
red_blood_cell_distribution_width 19:17142167-17142190 19:17252977-17253000 1.130000e-48 +
shbg 1:23491439-23491454 1:23817932-23817947 9.160000e-17 -
shbg 2:207588729-207588742 2:208453453-208453466 2.870000e-16 +
shbg 8:58482877-58482917 8:59395436-59395476 1.090000e-26 -
shbg 20:34384148-34384167 20:32971954-32971973 6.370000e-15 -
total_protein 5:128014207-128014217 5:127349899-127349909 4.620000e-16 -
total_protein 12:12725746-12725760 12:12878680-12878694 7.180000e-13 -
triglycerides 3:136197983-136197999 3:135916825-135916841 3.250000e-27 -
urate 3:142045613-142045631 3:141764455-141764473 1.770000e-25 -
urate 17:61373093-61373106 17:59450454-59450467 3.880000e-18 -
white_blood_cell_count 2:12793866-12793880 2:12933992-12934006 5.960000e-18 -
white_blood_cell_count 3:136449901-136449918 3:136168743-136168760 8.100000e-12 -
white_blood_cell_count 10:44390336-44390351 10:44885784-44885799 4.580000e-19 -