STR chr17:30469471-30469520

Repeat unit CCG/CGG repeats 16 times in the reference sequence.


...GGAGGGTGGGCGAGGCTCCCTGGGCCTGCGCTGCGGCGGCCTGACAGCGGGAGCGCTGTTCCGGCGCAGAGCGCGTTCGCGTTCCGAAAGCGCGTGTCCC
TCGCCGCGTGCCGTCGTCCC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACAGCCCGCTGGGCCGGAGGAGGCGGAGCTG
GCGCTGTCCCGGCTCTCTTGCGGGGAAGCAACTGAGGGGGCGGCGCGGCGGGCCCCGGCGGCCGAAGAGGCTGGCAGGTGGCGCCGTGG
...

No gene information available

No sequence data available.

Parameter Value
Mutation model: Mutation rate 3.04e-02
Mutation model: Beta 0.039
Mutation model: P(single step) 1.000
Constraint (Z-score) 5.543
Stutter model: up 0.002
Stutter model: down 0.009
Stutter model: p 0.674
See the about page for a detailed description of each parameter.

Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.70
SSC - r 0.72
1000 (EUR) - Concordance 0.76
1000G (EUR) - r 0.68
1000 (AFR) - Concordance 0.59
1000G (AFR) - r 0.37
1000 (EAS) - Concordance 0.51
1000G (EAS) - r 0.67

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-42 nan 1.000e+00
-30 0.25 3.370e-60
-27 0.26 6.687e-65
-24 0.82 0.000e+00
-21 0.35 3.537e-91
-18 0.36 7.938e-94
-15 0.69 4.215e-245
-12 0.35 3.334e-90
-9 0.46 1.521e-130
-6 0.61 5.751e-195
-3 0.43 4.471e-117
0 0.39 8.471e-105
3 0.23 1.583e-55
6 0.18 5.030e-43
9 0.05 2.513e-11
12 0.09 3.209e-21
15 0.01 2.541e-03
18 0.07 2.910e-17
21 0.19 4.075e-46
24 nan 1.000e+00
27 0.06 2.883e-15
30 0.04 4.662e-10
33 nan 1.000e+00
39 0.03 3.308e-08
See the about page for a detailed description of each parameter.