STR chr15:67533379-67533409

Repeat unit AC/GT repeats 15 times in the reference sequence.


...AGGCAGCTGGCTTTCTATGGTTCAGAATCAATAACAGGTGATACTCTCTTTAGCATGAATTAGAAGGCAACATGAAGTTCAAGGTGAATTCCCCAAACAC
CACAAATATCTGTTCTCCTA
CACACACACACACACACACACACACACACATTTTATCTATATATAAACATGCACACACACAACCCTTACCTTATGTCCTC
ACCTATCCACCTCAGCCAAAAAAGACAAATGCATTCTAAACTAGGCATGTTGATACTGTTATGGATTTTT
...

No gene information available

Gene (ENS) Tissue Beta (SE) P-value CAVIAR
AAGAB (ENSG00000103591.8) Muscle-Skeletal 0.18 (0.06) 1.35e-03 0.03
IQCH (ENSG00000103599.15) Nerve-Tibial 0.27 (0.06) 5.02e-05 0.01
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No sequence data available.

Parameter Value
Mutation model: Mutation rate 3.63e-04
Mutation model: Beta 0.000
Mutation model: P(single step) 0.784
Constraint (Z-score) 1.322
Stutter model: up 0.004
Stutter model: down 0.041
Stutter model: p 0.905
See the about page for a detailed description of each parameter.

Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.86
SSC - r 0.97
1000 (EUR) - Concordance 0.83
1000G (EUR) - r 0.99
1000 (AFR) - Concordance 0.57
1000G (AFR) - r 0.13
1000 (EAS) - Concordance 0.81
1000G (EAS) - r 0.97

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-12 nan 1.000e+00
-4 0.93 0.000e+00
-2 0.33 1.229e-83
0 0.79 0.000e+00
2 0.00 8.734e-01
4 0.80 0.000e+00
6 0.74 2.486e-284
8 0.42 4.058e-114
10 0.63 2.900e-210
12 0.44 5.737e-123
14 0.47 1.179e-132
16 0.49 2.017e-140
See the about page for a detailed description of each parameter.