STR chr15:50397064-50397085

Repeat unit AC/GT repeats 11 times in the reference sequence.


...ATTATACAAAAAAGATACTTGCACACGCATGTTTATAGCAGCACAATTCTCAATCGCAAAAAATATGGAAGCAGCCAAAATGCCCATCAATCAACGAGCA
AATAAAGAAAATGTTGCATA
CACACACACACACACACACACCCATATATACACTATGGAATACTACTCAGCCATAAGAATGAACGAAATAATGGCATTTG
CAGCAACCTGGATGGAATTGGAGACCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAAC
...

No gene information available

Gene (ENS) Tissue Beta (SE) P-value CAVIAR
SLC27A2 (ENSG00000140284.6) Lung -0.24 (0.07) 2.63e-04 0.08
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No sequence data available.

Parameter Value
Mutation model: Mutation rate 1.09e-04
Mutation model: Beta 0.000
Mutation model: P(single step) 0.821
Constraint (Z-score) 0.692
Stutter model: up 0.012
Stutter model: down 0.036
Stutter model: p 0.733
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Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.92
SSC - r 0.96
1000 (EUR) - Concordance 0.95
1000G (EUR) - r 0.99
1000 (AFR) - Concordance 0.78
1000G (AFR) - r 0.96
1000 (EAS) - Concordance 0.91
1000G (EAS) - r 0.96

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
0 1.00 0.000e+00
6 1.00 0.000e+00
12 0.96 0.000e+00
14 0.83 0.000e+00
16 0.80 0.000e+00
18 0.79 3.409e-322
20 0.70 2.495e-252
22 0.40 2.781e-109
24 0.16 1.876e-37
See the about page for a detailed description of each parameter.