STR chr1:150552235-150552290

Repeat unit CCCCGG/CCGGGG repeats 9 times in the reference sequence.


...GGCGGCCAGTCCTACGGGGTGGCGCCAGCGAACTCTTTTTTTTTAAAAAAAGTATTCCCATAAAAGGGGAAAGGGGCGGCAGCTTCCGGAGGGTTGCGCA
CGGCACCTACCAGCTGCCCGGCCGGGCCGGGGCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCTGAGCCGGGGCCTGAGCGGGGCCTTCCGGTCTTCGGA
GGCTCTGAGTGCCGGTTACGTAACGGCGGCTCCGAGCGCCTGGGGTCCTCCCAGAGCTCCTGGGCTCGAGCTCTTTCCATGAGCACCTCGGGCCT...

No gene information available

Gene (ENS) Tissue Beta (SE) P-value CAVIAR
ADAMTSL4-AS1 (ENSG00000203804.3) Cells-Transformedfibroblasts -0.25 (0.07) 2.00e-04 0.44
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No sequence data available.

Parameter Value
Mutation model: Mutation rate 1.69e-04
Mutation model: Beta 0.286
Mutation model: P(single step) 0.700
Constraint (Z-score) 0.000
Stutter model: up 0.001
Stutter model: down 0.001
Stutter model: p 0.740
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Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.98
SSC - r 0.97
1000 (EUR) - Concordance 0.98
1000G (EUR) - r 1.00
1000 (AFR) - Concordance 1.00
1000G (AFR) - r 1.00
1000 (EAS) - Concordance 1.00
1000G (EAS) - r 1.00

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-23 nan 1.000e+00
-19 nan 1.000e+00
-18 0.95 0.000e+00
-13 0.65 6.191e-217
-12 0.97 0.000e+00
-6 nan 1.000e+00
0 0.94 0.000e+00
See the about page for a detailed description of each parameter.