STR chr22:46622056-46622068

Motif AT repeats 6 times in the reference sequence.


...CACTTACAAACTACACATGTGCTTATACATGCTCACATGCATGTATATGCACACACATACCCTCACCTTATGCACACATGTACCCACACACGTACCCACA
CATATACAAGCATGCACACA
TATATATATATACACATGCTCACACGCATACCCACACTCACATGTGTGCACATATGCTCACACACACGTGCACACACATG
CTCACACACACACTTACTGTTGCTCAGGCTTAGCTGCTTTGGGCTTAAGAAG
...


No gene information available





Gene (ENS)TissueBeta (SE)P-valueCAVIAR
PPARA (ENSG00000186951.12) Muscle-Skeletal 0.18 (0.05) 1.17e-03 0.04
PPARA (ENSG00000186951.12) Cells-Transformedfibroblasts 0.21 (0.07) 1.71e-03 0.03
PPARA (ENSG00000186951.12) Nerve-Tibial 0.22 (0.06) 3.92e-04 0.02
PKDREJ (ENSG00000130943.5) WholeBlood 0.18 (0.05) 1.42e-03 0.00
See the about page for detailed description of each parameter.


ParameterValue
Mutation model: Mutation rate 6.24e-05
Mutation model: Beta 0.775
Mutation model: P(single step) 0.985
Constraint (Z-score) 0.000
Stutter model: up 0.001
Stutter model: down 0.007
Stutter model: p 0.948
See the about page for detailed description of each parameter.


Locus-level imputation metrics

ParameterValue
SSC - Concordance 0.97
SSC - r 0.94
1000 (EUR) - Concordance 1.00
1000G (EUR) - r 1.00
1000 (AFR) - Concordance 0.99
1000G (AFR) - r 0.95
1000 (EAS) - Concordance 0.99
1000G (EAS) - r 0.00

Allele-level imputation metrics

Allele (bp diff from hg19)r2P-val
-2 0.96 0.000e+00
0 0.84 0.000e+00
2 0.70 1.858e-249
See the about page for detailed description of each parameter.