• Full SQL dump of hg38 data to set up WebSTR-API locally webstr_2023_06_23.dump
• EnsemblTR Reference panel archive ensembletr.zip
• EnsembleTR individual-level genotypes and population-level summary statistics can be downloaded from https://github.com/gymrek-lab/EnsembleTR
• Sinergia CRC Reference panel(gangstr_crc_hg38) crc_gangstr_hg38.tsv
• Sinergia CRC (gangstr_crc_hg38) Variation Data archive crc_gangstr_hg38_TCGA_variation.gz
• Sinergia CRC - MSI related loci in the format chromosome:start_coordinate, mapped to genes MSI_related_str.csv

WebSTR data has been imported from these sources:

• HipSTR hg19 reference STR regions available from the HipSTR github page hg19.hipstr_reference.bed.gz
• Gene annotations use GENCODE version 19 (Ensembl 74) available in the file genocde.gtf.gz obtained from the ExAC data download
• Imputation metrics from Supplementary Tables 1 and 2 of Saini et al 2018
• Mutation rate and constraint information from Gymrek et al. 2017 available for download from s3://strconstraint/Gymrek_etal_SupplementalData1_v2.bed.gz
• eSTR data is based on Supplementary Dataset 1 of Fotsing et al.
• Full eSTR summary statistic data: eSTRGtex_DatasetS2.tar.gz
• Per-locus selection metrics computed by SISTR:SISTR results.txt Read me: README.txt

Downloads previously available on strcat.teamerlich.org

• 1000 Genomes Project Phase 1 calls (Willems et al 2014)
  • phase_1_final_calls.vcf.gz
  • hg19_ref.tar.gz
  • expanded_hg19_ref.tar.gz
• LobSTR calls on the Simons Genome Diversity Project (SGDP) (Mallick et al 2016 and Gymrek et al 2017)
  • SGDP chr1 [VCF] [index]
  • SGDP chr2 [VCF] [index]
  • SGDP chr3 [VCF] [index]
  • SGDP chr4 [VCF] [index]
  • SGDP chr5 [VCF] [index]
  • SGDP chr6 [VCF] [index]
  • SGDP chr7 [VCF] [index]
  • SGDP chr8 [VCF] [index]
  • SGDP chr9 [VCF] [index]
  • SGDP chr10 [VCF] [index]
  • SGDP chr11 [VCF] [index]
  • SGDP chr12 [VCF] [index]
  • SGDP chr13 [VCF] [index]
  • SGDP chr14 [VCF] [index]
  • SGDP chr15 [VCF] [index]
  • SGDP chr16 [VCF] [index]
  • SGDP chr17 [VCF] [index]
  • SGDP chr18 [VCF] [index]
  • SGDP chr19 [VCF] [index]
  • SGDP chr20 [VCF] [index]
  • SGDP chr21 [VCF] [index]
  • SGDP chrX [VCF] [index]
  • SGDP chrY [VCF] [index]
• splice STR bed potential_spliceSTRs.bed.gz