STR chr20:2633379-2633421

Repeat unit AGGCCC/GGGCCT repeats 7 times in the reference sequence.


...CCGGAGCGCGCTAGCCGCATTGCGAGCCGAACCCGGGAGCTGGCGCCATGGTGAGGAGTGGTTGCGGGGCGCGGGCGACGCGACGGTGGGGGTTTCGGCC
TGCGTTCGGGCCGCAGACAG
GGCCTGGGCCTGGGCCTGGGCCTGCGCCTGCGCCTGCGCCTGCCCTGGGAACGGGTTCCGGCAGACGCTGAGGTTGCGTT
GACGCTCGCGCCCCGGCTCCCGTTCCAGGTGCTGTTGCACGTGCTGTTTGAGCACGCGGTCGGCTACGCGCTGCTGGCGCTG
...

No gene information available

Gene (ENS) Tissue Beta (SE) P-value CAVIAR
NOP56 (ENSG00000101361.10) Muscle-Skeletal 0.42 (0.05) 2.68e-15 1.00
NOP56 (ENSG00000101361.10) Artery-Tibial 0.27 (0.06) 6.15e-06 0.80
NOP56 (ENSG00000101361.10) Skin-SunExposed 0.28 (0.06) 1.30e-06 0.67
NOP56 (ENSG00000101361.10) Thyroid 0.30 (0.06) 6.99e-07 0.65
NOP56 (ENSG00000101361.10) Adipose-Subcutaneous 0.22 (0.06) 3.09e-04 0.23
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No sequence data available.

Parameter Value
Mutation model: Mutation rate 2.80e-05
Mutation model: Beta 0.580
Mutation model: P(single step) 0.700
Constraint (Z-score) 0.000
Stutter model: up 0.002
Stutter model: down 0.003
Stutter model: p 0.466
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Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.93
SSC - r 0.93
1000 (EUR) - Concordance 0.91
1000G (EUR) - r 0.89
1000 (AFR) - Concordance 0.92
1000G (AFR) - r 0.86
1000 (EAS) - Concordance 0.79
1000G (EAS) - r 0.51

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-12 nan 1.000e+00
-6 0.93 0.000e+00
0 0.87 0.000e+00
6 0.70 1.582e-248
12 0.78 1.834e-318
18 0.41 1.175e-110
24 0.73 3.105e-274
30 0.49 4.730e-142
36 0.65 3.342e-217
42 0.06 9.432e-15
See the about page for a detailed description of each parameter.