STR chr2:191745599-191745646

Repeat unit AGC/GCT repeats 16 times in the reference sequence.


...GCGGGCGAAAGGGGCGGGCCGTCGGCGAGCGCTGAAGGTCTCTAGCCCTCCCCTGCGCTTTAGCCTCAGTGCGGAGCCTTAGGCGGAGCGAAGAGAACCG
GTCGCGGCAATCCTAGCGCG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCGCATCCGCTGCGGGAGTCCGAGCCGGAACC
ACACCCAAGTAGCTGCCCTTTCCTCTTCTGTCATCTCACCGCCCCACCACAGACCGCGTTCCCCGAGGAAACCGGCCGCCCACGCCC
...

No gene information available

Gene (ENS) Tissue Beta (SE) P-value CAVIAR
GLS (ENSG00000115419.8) Esophagus-Mucosa -0.34 (0.06) 7.70e-08 0.65
GLS (ENSG00000115419.8) Nerve-Tibial -0.25 (0.06) 4.57e-05 0.47
GLS (ENSG00000115419.8) Muscle-Skeletal -0.32 (0.05) 1.79e-09 0.28
GLS (ENSG00000115419.8) Esophagus-Muscularis -0.27 (0.07) 9.31e-05 0.11
See the about page for a detailed description of each parameter.
No sequence data available.

Parameter Value
Mutation model: Mutation rate 3.84e-03
Mutation model: Beta 0.089
Mutation model: P(single step) 0.700
Constraint (Z-score) 2.776
Stutter model: up 0.002
Stutter model: down 0.015
Stutter model: p 0.930
See the about page for a detailed description of each parameter.

Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.79
SSC - r 0.90
1000 (EUR) - Concordance 0.74
1000G (EUR) - r 0.93
1000 (AFR) - Concordance 0.67
1000G (AFR) - r 0.48
1000 (EAS) - Concordance 0.73
1000G (EAS) - r 0.73

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-33 nan 1.000e+00
-30 0.00 8.963e-01
-24 0.94 0.000e+00
-21 0.43 2.323e-116
-18 0.79 0.000e+00
-15 0.63 5.950e-209
-12 0.00 8.730e-01
-9 0.21 9.922e-51
-6 0.66 3.325e-224
-3 0.52 4.775e-154
0 0.37 2.156e-98
3 0.20 9.425e-48
6 0.15 6.652e-36
9 0.16 1.595e-36
12 0.06 1.157e-13
15 0.00 8.581e-01
18 nan 1.000e+00
21 0.00 8.704e-01
24 nan 1.000e+00
27 0.00 8.730e-01
36 0.00 8.468e-01
60 nan 1.000e+00
See the about page for a detailed description of each parameter.