STR chr5:146258291-146258322

Motif AGC repeats 10 times in the reference sequence.


...CTGGTCCCACGGGAGGGCGGCTCCGGCAGGCGGGGGTAGGGAAGCTGGCGGGGAGCTGGGCAGGGCGCTGCAGCCGGCGCCAGCGCACTCACCCTCACAC
CCACACGCGCGCACTCGCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGGAGGCTGGAGGCGGCTGGTGCATTAAAGGCGAGGCTCCTCCCAACCG
CGTCAGCAGCCCCACGACTCTTTCCCAGCAGCAGTGGTGGCCGAGGCAGAGGCTGCGGCTGCTCTTTGCTG...


No gene information available





Gene (ENS)TissueBeta (SE)P-valueCAVIAR
PPP2R2B (ENSG00000156475.14) Esophagus-Mucosa -0.32 (0.06) 8.80e-07 0.19
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ParameterValue
Mutation model: Mutation rate 1.63e-04
Mutation model: Beta 0.063
Mutation model: P(single step) 0.700
Constraint (Z-score) 0.838
Stutter model: up 0.001
Stutter model: down 0.010
Stutter model: p 0.836
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Locus-level imputation metrics

ParameterValue
SSC - Concordance 0.94
SSC - r 0.94
1000 (EUR) - Concordance 0.93
1000G (EUR) - r 0.98
1000 (AFR) - Concordance 0.77
1000G (AFR) - r 0.83
1000 (EAS) - Concordance 0.80
1000G (EAS) - r 0.96

Allele-level imputation metrics

Allele (bp diff from hg19)r2P-val
-6 nan 1.000e+00
-3 0.93 0.000e+00
0 0.92 0.000e+00
3 0.05 4.422e-13
6 nan 1.000e+00
9 0.93 0.000e+00
12 0.81 0.000e+00
15 0.81 0.000e+00
18 0.53 3.681e-155
21 0.47 1.634e-130
24 0.54 7.104e-162
27 nan 1.000e+00
33 nan 1.000e+00
45 0.67 8.491e-226
See the about page for detailed description of each parameter.