STR chr16:87637889-87637935

Motif AGC repeats 15 times in the reference sequence.


...CCAGGAATCTCGTCTTTCAGTGGCTGCATCGTTTTCACCATTAGTTGAGGGAATCGATCTGTGCCTTCATTCTAAGATGCCACCGCATTCGGGGCAGAGC
CGGGGCCGGAAGCCAGGGAGCTGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAAGATGGTTTCTGTGCAGGGAACCTTGGCCGGC
TCTGCAGCTGCCCGCCTGCCTGGACTCTCCGATATCCACTCCTCAGTGCACCTGACACGCATGGAGCCGGTCCTTTCCTGGAAGCC...


No gene information available







ParameterValue
Mutation model: Mutation rate 1.72e-04
Mutation model: Beta 0.043
Mutation model: P(single step) 0.921
Constraint (Z-score) -0.307
Stutter model: up 0.002
Stutter model: down 0.010
Stutter model: p 0.743
See the about page for detailed description of each parameter.


Locus-level imputation metrics

ParameterValue
SSC - Concordance 0.88
SSC - r 0.74
1000 (EUR) - Concordance 0.91
1000G (EUR) - r 0.75
1000 (AFR) - Concordance 0.76
1000G (AFR) - r 0.91
1000 (EAS) - Concordance 0.73
1000G (EAS) - r 0.67

Allele-level imputation metrics

Allele (bp diff from hg19)r2P-val
-18 0.10 7.115e-23
-15 0.00 8.965e-01
-12 0.00 9.224e-01
-9 0.72 1.706e-261
-3 0.57 6.928e-174
0 0.79 4.203e-319
3 0.48 3.814e-138
6 0.75 1.178e-286
9 0.43 5.378e-117
12 0.16 1.075e-36
15 0.12 9.282e-29
18 nan 1.000e+00
27 nan 1.000e+00
30 0.00 9.268e-01
39 0.40 6.009e-107
See the about page for detailed description of each parameter.