STR chr12:7045880-7045936

Repeat unit AGC/GCT repeats 19 times in the reference sequence.


...CACCTCCTCCCTATGGCCGCCTCTTAGCCAACAGCAATGCCCATCCAGGCCCCTTCCCTCCCTCTACTGGGGCCCAGTCCACCGCCCACCCACCAGTCTC
AACACATCACCATCACCACCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACGGAAACTCTGGGCCCCCT
CCTCCTGGAGCATTTCCCCACCCACTGGAGGGCGGTAGCTCCCACCACGCACACCCTTACGCCATGTCTCCCTCCCTGGGGTCTCTGAGGCCCTAC...

No gene information available

No sequence data available.

Parameter Value
Mutation model: Mutation rate 6.80e-04
Mutation model: Beta 0.075
Mutation model: P(single step) 0.700
Constraint (Z-score) 0.944
Stutter model: up 0.001
Stutter model: down 0.014
Stutter model: p 0.914
See the about page for a detailed description of each parameter.

Locus-level imputation metrics

Parameter Value
SSC - Concordance 0.80
SSC - r 0.89
1000 (EUR) - Concordance 0.78
1000G (EUR) - r 0.86
1000 (AFR) - Concordance 0.72
1000G (AFR) - r 0.52
1000 (EAS) - Concordance 0.69
1000G (EAS) - r 0.94

Allele-level imputation metrics

Allele (bp diff from hg19) r2 P-val
-27 nan 1.000e+00
-24 nan 1.000e+00
-21 0.88 0.000e+00
-18 0.64 1.631e-211
-15 0.79 1.714e-321
-12 0.29 1.282e-71
-9 0.54 2.575e-161
-6 0.64 1.464e-211
-3 0.51 1.052e-150
0 0.64 1.182e-212
3 0.44 8.122e-121
6 0.31 2.986e-78
9 0.19 1.715e-45
12 0.15 3.676e-36
15 0.25 1.644e-62
18 0.00 8.965e-01
21 0.14 4.835e-33
24 0.05 4.970e-12
27 nan 1.000e+00
See the about page for a detailed description of each parameter.